Source code for pytximport.definitions

"""Type definitions for internal use in `pytximport`."""

from typing import Any, List, Optional, TypedDict

from numpy.typing import ArrayLike




class InferentialReplicates(TypedDict):
    """Inferential replicates for a set of samples."""



    variance: ArrayLike



    replicates: Any






class OmicData(TypedDict):
    """Omic-level expression data from multiple samples."""



    abundance: Optional[ArrayLike]



    counts: Optional[ArrayLike]



    length: ArrayLike




    inferential_replicates: Optional[InferentialReplicates]






class TranscriptData(OmicData):
    """Transcript-level expression data from multiple samples."""



    transcript_id: List[str]






class GeneData(OmicData):
    """Gene-level expression data from multiple samples."""



    gene_id: List[str]