Welcome to the pytximport documentation!

Start

• pytximport
  • Manuscript & Documentation
  • Installation
  • Quick Start
  • Motivation
  • Citation
  • License
  • Differences
  • Contributing
  • Running the tests locally
  • Building the documentation locally
  • Development status
  • Data sources
• Installation
  • Installation Options
• Vignette
  • Creating your transcript to gene map
    • Build it from Ensembl
    • Use a gene transfer format file
    • Map transcript names to gene names
  • Importing transcript quantification files
  • Exporting transcript-level count estimates
  • Exporting AnnData files
  • Exporting SummarizedExperiment files
  • Use from the command line
  • Inferential replicates
  • Biotype filtering
  • Downstream analysis with PyDESeq2
• Release Notes

API Documentation

• pytximport
  • Submodules
    • pytximport.core
      • Attributes
      • Functions
      • Package Contents
    • pytximport.definitions
      • Classes
      • Package Contents
    • pytximport.importers
      • Functions
      • Package Contents
    • pytximport.utils
      • Functions
      • Package Contents
  • Attributes
  • Functions
  • Package Contents
    • __version__
    • cli()
    • pytximport
    • tximport()

GitHub

• pytximport repository

Other projects

• spatiomic
• pyclustree
• BioContextAI

Additional Information

• Legal Notice & TOS
  • Website Terms and Conditions of Use
• Privacy Policy
• License
  • GNU GENERAL PUBLIC LICENSE

Indices and tables

• Index

• Module Index

• Search Page