Installation

pytximport only supports Python versions greater than or equal to 3.9.

Recommendation

Installation via Bioconda is the recommended way to include pytximport in your projects. A pip-installabe package is also provided.

Performance

While not required, we recommend users also install pyarrow for faster import of tab-separated value-based quantification files.

Installation Options

Choose an option to install this package.

Bioconda

Install pytximport from Bioconda using mamba or conda:

mamba install -c bioconda pytximport
mamba install -c conda-forge pyarrow-core

PyPi

Install pytximport package using pip:

python3 -m pip install pytximport pyarrow

GitHub

Install pytximport from GitHub using pip:

python3 -m pip install git+https://github.com/complextissue/pytximport.git

Source

This option is only recommended for potential contributors and installs additional developement dependencies. Install pytximport from source:

git clone --depth 1 -b dev https://github.com/complextissue/pytximport.git
cd pytximport
pyenv local 3.9
make create-venv
source .venv/source/activate
make install-dev